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§7 step 8 removed the kept runtime root while the graph session of steps 4-7 may still have a daemon running under it; stop that daemon under the sourced CBM_RUNTIME_DIR first. §13 Reproducibility still cleared ~/.cache/codebase-memory-mcp/*.db and called the harness unflagged, which no longer describes what the harness does: it indexes into a run-private root, and only CBM_BENCH_KEEP_RUNTIME=1 hands that root, via runtime-root.txt, to the graph phase. Signed-off-by: Anton Standrik <astandrik@yandex-team.ru>